Exon7 Targeted CRISPR-Prime Editing Approaches for SMN2 Gene Editing in Spinal Muscular Atrophy


İnci C. C., Babar H. A., Kılıç Ö., Kulaç S., Oltan S., Yelgen G., ...More

4th Scientific Internatianol Congress on Spinal Muscular Atrophy, Ghent, Belgium, 14 - 16 March 2024, pp.1, (Full Text)

  • Publication Type: Conference Paper / Full Text
  • City: Ghent
  • Country: Belgium
  • Page Numbers: pp.1
  • Istanbul Kültür University Affiliated: Yes

Abstract

Spinal Muscular Atrophy (SMA) is a fatal neuromuscular disease characterized by motor neuron loss and advanced muscle weakness, which occurs in functional

SMN (Survival Motor Neuron) protein deficiency with SMN1 gene-induced deletions and mutations. The incidence of SMA, which is an autosomal recessive

disease, is 1/10,000 in the world. The SMN protein acts as a molecular chaperone in the formation of the spliceosome complex, which catalyzes the splicing of premRNA,

enabling mRNAs and non-coding RNAs to mature. Since the current SMN1-encoding Adeno-associated virus (AAV) or SMN2 gene targeting antisense

oligonucleotide-based strategies cannot provide long-term stable SMN expression in neuron cells, more effective methods need to be developed.

CRISPR technology, which adds a new dimension to genetic engineering and gene therapies, makes it possible to treat many genetic diseases. In terms of SMA,

some previous studies in the literature prove that it is possible to treat SMA with the CRISPR strategy. Homology Directed Repair (HDR)-based CRISPR

technology, which results in a high rate of in-del (insertion-deletion) mutations rather than editing, was shown unsuitable for therapeutic applications. CRISPRPrime

editing (PE) technology is a new generation of gene editing approach that precisely provides various genomic modifications without the need for doublestrand

breakage or donor DNA sequences. CRISPR-Prime Editing method has also been used in rare diseases such as sickle cell anemia and Tay-Sachs, and their

efficiency in editing various pathogenic mutations has been demonstrated. However, CRISPR Prime Editing-mediated gene editing for Spinal Muscular Atrophy

(SMA) have not yet been investigated.

The c.840 T-C transition and c.859 G-C transformations in the SMN2 gene and the correction of these point mutations with a single pegRNA at the same time

were investigated for the first time in this study. Here, we showed that CRISPR-PE systems could increase SMN2 gene activity and SMN protein expression by

ensuring exon 7 participation by editing c.840 T-C transition and c.859 G-C transformations. The fact that Prime Editing method showed the efficacy and stability

of modifications in SMN2 genes that were investigated in SMN-low Jurkat cells as a proof-of-concept. This study enabled the next step with the CRISPR-Prime

Editing approach to be tested ex vivo in primary cell lines from SMA patients and SMN-low neuronal cells.